General structure of the recombination sites

attB sequences

attB1 ACA AGT TTG TAC AAA AAA GCA GGCT
attB1.1 ACA ACT TTG TAC AAA AAA GTT G
attB2 AC CCA GCT TTC TTG TAC AAA GTG GT
attB2.2 -- -CA ACT TTC TTG TAC AAA GTT GT

 

attB1: aca aGt ttg tac aaa aaa gCA ggct

attB1.1: acaaCtttgtacaaaaaagTTg

attB2: acCactttgtacaagaaagctgggt

attB2.2: acaactttgtacaagaaagTtg

Reading frames of the cassettes

Reading Frame A
NNN ATC ACA AGT TTG TAC AAA AAA --- --- T TTC TTG TAC AAA GTG GTG ATN NNN
NNN TAG TGT TCA AAC ATG TTT TTT --- --- A AAG AAC ATG TTT CAC CAC TAN NNN
Reading Frame B
NNA ATC ACA AGT TTG TAC AAA AAA --- --- T TTC TTG TAC AAA GTG GTG ATN NNN
NNT TAG TGT TCA AAC ATG TTT TTT --- --- A AAG AAC ATG TTT CAC CAC TAN NNN
Reading Frame C
NAT ATC ACA AGT TTG TAC AAA AAA --- --- T TTC TTG TAC AAA GTG GTG ATN NNN
NTA TAG TGT TCA AAC ATG TTT TTT --- --- A AAG AAC ATG TTT CAC CAC TAN NNN